Imports
%matplotlib inline
import matplotlib.pyplot as plt
import seaborn as sns
import pandas as pd
import numpy as np
import json
import time
import torch
import re
from sentence_transformers import SentenceTransformer, utilSpecter embeddings using sentence transformers
Introduction
In the context of machine learning, an embedding is a lower-dimensional representation of a high-dimensional data point. It is a vector of numerical values that captures some of the important characteristics of the original data point, while discarding less relevant or redundant information.
Embeddings are commonly used in natural language processing, where they are used to represent words or phrases as numerical vectors. These vectors capture the meaning and context of the words or phrases, and can be used in downstream tasks such as classification or similarity measurement.
Sentence transformers are a type of natural language processing model that is used to generate sentence-level embeddings. These embeddings capture the meaning and context of sentences, and can be used for downstream tasks such as classification or similarity measurement.
The sentence transformer allenai-specter is a conversion of the AllenAI SPECTER model to sentence-transformers. It can be used to map the titles and abstracts of scientific publications to a vector space such that similar papers are close.
Read data and construct sentences
df = pd.read_csv(INPUT_FILE)
df = df.drop_duplicates(subset=["doi"])\
.dropna(subset=["doi", "abstract"]).reset_index(drop=True)
sentences = (df["title"] + " " + df["abstract"]).valuesLoad model
model = SentenceTransformer('sentence-transformers/allenai-specter')Compute or load embeddings
if COMPUTE_EMBEDDINGS:
embeddings = model.encode(sentences, normalize_embeddings=True)
np.save(OUTPUT_FILE_EMBEDDINGS, embeddings)
else:
embeddings = np.load(OUTPUT_FILE_EMBEDDINGS)Find similar documents
Find the most and the least similar publications given the COVID-19 query we used to initially query the Dimensions database using semantic search.
Helper function for finding similar documents
def find_n_similar(query, n=5, most_similar=True):
query_emb = model.encode(query, normalize_embeddings=True)
scores = util.dot_score(query_emb, embeddings)[0].cpu().tolist()
doc_score_pairs = list(zip(sentences, scores))
doc_score_pairs = sorted(doc_score_pairs, key=lambda x: x[1], reverse=most_similar)
for doc, score in doc_score_pairs[:n]:
print(score, doc)Semantic search example
covid_query = "2019-nCoV COVID-19 SARS-CoV-2 HCoV-2019 hcov NCOVID-19 severe acute respiratory syndrome coronavirus 2 severe acute respiratory syndrome corona virus 2 “coronavirus disease 2019” coronavirus corona virus Wuhan China novel"
print("MOST SIMILAR:")
find_n_similar(covid_query, n=5, most_similar=True)
print("--------------")
print("LEAST SIMILAR:")
find_n_similar(covid_query, n=5, most_similar=False)MOST SIMILAR:0.9295981526374817 Brief Evaluation on COVID-19: The 2020 Epidemic Caused by SARS-CoV-2 The virus responsible for the coronavirus disease of 2019 (COVID-19) is Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Initially it is recognized in Wuhan (Hubei, China) in December2019 The beginning of 2020 has seen the rise of COVID-19 outburst caused by a novel coronavirus, it has since been declared an epidemic by the World Health Organization in March of 2020. And there a need to better understand this new virus and to develop ways to control its spread. This study, will provide a brief review of viral origin, identification, symptoms, transmission, diagnosis, and potential treatment strategies for the newly identified SARS-CoV2.
0.92499178647995 Is SARS CoV-2 a new Frankenstein monster virus? (Preprint) <sec>
BACKGROUND
<p>Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a novel virus of beta coronavirus genus originated in Wuhan, China in December 2019, resulted in the pandemic spread of Corona Virus Disease 2019 (COVID-19) worldwide. This genus also contains SARS-CoV (originated in China 2002-2003) and MERS-CoV (found in Saudi Arabia 2012). The nucleotide sequences of SARS-CoV-2 is closer to SARS-CoV (with approximately 80% identity) than to MERS-CoV. Despite these similarities, SARS-CoV-2 has two main features over the other coronaviruses. The first is the high contagious rate and the second is the immune response evasion. The higher transmission ability makes this virus quickly spread worldwide with a high mortality rate and more economic losses. This review will provide an overview of the current knowledge on the role of some viral and host cell factors in higher transmission and contagious spread of SARS-CoV-2.</p>
</sec>
0.9248875379562378 COVID-19: A Conundrum to Decipher OBJECTIVE: Recent worldwide outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of respiratory coronavirus disease 2019 (COVID-19), is a current, ongoing life-threatening crisis and international public health emergency. The early diagnosis and management of the disease remains a major challenge. In this review, we aim to summarize the updated epidemiology, causes, clinical manifestation and diagnosis, as well as prevention and control of the novel coronavirus SARS-CoV-2.MATERIALS AND METHODS: A broad search of the literature was performed in “PubMed” “Medline” “Web of knowledge”, and “Google Scholar” World Health Organization-WHO” using the keywords “severe acute respiratory syndrome coronavirus”, “2019-nCoV”, “COVID-19, “SARS”, “SARS-CoV-2” “Epidemiology” “Transmission” “Pathogenesis” “Clinical Characteristics”. We reviewed and documented the information obtained from literature on epidemiology, pathogenesis and clinical appearances of SARS-CoV-2 infection.RESULTS: The global cases of COVID-19 as of April 2, 2020 have risen to more than 900,000 and morbidity has reached more than 47,000. The incidence rate for COVID-19 has been predicted to be higher than the previous outbreaks of other coronavirus family members, including those of SARS-CoV and the Middle East Respiratory Syndrome Coronavirus (MERS-CoV). The main clinical presentation of SARS-CoV-2 infection ranges from asymptomatic stages to severe lower respiratory infection in the form of pneumonia. Most of the patients also presented with fever, cough, sore throat, headache, fatigue, myalgia and breathlessness.Individuals at higher risk for severe illness include elderly people and patients with a weakened immune system or that are suffering from a underlying chronic medical condition like hypertension, diabetes, cancer, respiratory illness or cardiovascular diseases.CONCLUSIONS: SARS-Cov-2 has emerged as a worldwide threat, currently affecting 170 countries and territories across the globe. There is still much to be understood regarding SARS-CoV-2 about its virology, epidemiology and clinical management strategies; this knowledge will be essential to both manage the current pandemic and to conceive comprehensive measures to prevent such outbreaks in the future.
0.9225337505340576 Why COVID-19 Transmission is More Efficient and Aggressive than Viral Transmission in Previous Coronavirus Epidemics? Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is causing pandemic of coronavirus disease 2019 (COVID-19). The worldwide transmission of COVID-19 from human to human is spreading like wildfire, affecting almost every country in the world. In the past 100 years, the globe did not face microbial pandemic similar in scale to COVID-19. Taken together, both previous outbreaks of other members of the coronavirus family (SARS-CoV and MERS-CoV) did not produce even 1% of the global harm already inflicted by COVID-19. There are also four other CoVs capable of infecting humans (HCoVs), which circulate continuously in the human population, but their phenotypes are generally mild, and these HCoVs received relatively little attention. These dramatic differences between infection with HCoVs, SARS-CoV, MERS-CoV, and SARS-CoV-2 raise many questions, such as: Why is COVID-19 transmitted so quickly? Is it due to the some specific features of the viral structure? Are there some specific human (host) factors? Are there some environmental factors? The aim of this review is to collect and concisely summaries the possible and logic answers to these questions.
0.9212179183959961 <strong>Update on the </strong><strong>SARS-CoV-2 (COVID-19) Outbreak: A Global Pandemic Challenge</strong> The 2019 novel coronavirus (previously 2019-nCoV) or coronavirus infectious disease 2019 (COVID-19) outbreak has been summarized as on March 29, 2020. COVID-19 is a highly transmittable and pathogenic viral infection caused by severe acute respiratory syndrome coronavirus 2 (SERS-CoV-2). The disease was first seen during an outbreak in Wuhan, China and continuous spreading from human to human around the sphere. The disease is uncontrolled and increasing the death toll through. The world is facing a global challenge to protect human lives caused by coronavirus outbreak. The number of infected patients is increasing day by day due to COVID-19 as a pandemic. The world health organization (WHO) has declared global public health emergency on January 30, 2020. The disease has been spread around 201 countries with total confirmed cases 634835 and death cases 29891 as on March 29, 2020. The goal of this review to summaries and update the clinical/medical features and suggestions for diagnosis of the COVID-19 as a pandemic. The discussion of the various therapeutic algorithms, risk, prevention and control based on the latest reports has been provided.
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LEAST SIMILAR:0.35479187965393066 Measuring Learning Organization Practice & Its Impact on Employees’ Job Satisfaction: A Study on the Banking Sector of Bangladesh Practice of learning organization (LO) is essential for firms that want to meet global challenges and adapt to rapid changing environment. Firms that do not learn continuously or support their employees to learn, struggle to remain competitive in some circumstances (e.g., Covid 19). Some research showed that LO is more productive than the traditional firm. But there is no study conducted to measure the impact of learning organization practice on Employees’ job satisfaction in Bangladesh. This empirical study will measure the practice of LO and its impact on employees’ job satisfaction in the banking sector. To measure the practice of LO and its impacts on job satisfaction, the indicators are grouped under seven dimensions of LO that identified by Watkins and Marsik (2003). Multiple regression analysis has been conducted to measure the impact of LO dimensions on the job satisfaction of employees. The study reveals that commercial banks in Bangladesh practice moderate level of learning organization although there is a significant impact of learning organization practice on employees’ job satisfaction. Research implies that learning organization practice is one of the important drivers of competitive advantage. Organizations that integrate all the dimensions into their organizational systems, culture and structure can better satisfy their employees than their competitors. The study also suggests for similar studies in other sectors and countries.
0.3753575384616852 E-Payment Services Among Undergraduate Students in Palestine: Survey Study This work aims to explore the extend of knowledge that undergraduate students at local Universities have about electronic payment (e-payment) methods. The population is chosen to be the undergraduate students studying at the faculty of information technology (IT) and engineering faculty at both the Islamic University of Gaza and Gaza University in Gaza, Palestine. To satisfy the aim of this work, electronic questionnaire (e-questionnaire) is built and distributed to the population of this study. The retrieved questionnaires were 10% of the population of the study. The collected data have been analyzed using SPSS program. The results showed that the students trust the e-payment services but they lack the needed knowledge about the system and its usage. To over this deficiency, we recommend that local universities should provide training courses and specialized lectures given by experts in the field to the students. In addition, we recommend that local universities introduce new courses to the students in which they learn about e-commerce, e-banking and e-payment methods.
0.37568485736846924 Employee Retention: A Study of Indian Insurance Industry The aim of this paper is to understand the need of employee retention in insurance industry in India. Employee retention has ever been termed as complex phenomenon and always intrigued HR managers. General Insurance industry in India is sunrise industry. Post-liberalization, the insurance industry in India has recorded significant growth which could not have been possible without efforts of human resources involved in it. The factors which make employees to stay in organization are known as retention factors. An attempt has been made to study the influencing factors like effect of compensation & rewards, Job security, working environment & work life balance, on the employees of insurance companies which they feel are more relevant & realistic to stay in the organization. A study of employees working in various general insurance companies in Ahmedabad region has been carried out to measure the influence of retention factors on employees’ retention. The data collected is analyzed using correlation analysis, hypothesis testing & multiple regression.
0.3824041485786438 E-Payment Services Among Undergraduate Students in Palestine: Survey Study This work aims to explore the extend of knowledge that undergraduate students at local Universities have about electronic payment (e-payment) methods. The population is chosen to be the undergraduate students studying at the faculty of information technology (IT) and engineering faculty at both the Islamic University of Gaza and Gaza University in Gaza, Palestine. To satisfy the aim of this work, an electronic questionnaire (e-questionnaire) is built and distributed to the population of this study. The retrieved questionnaires were 10% of the population of the study. The collected data have been analyzed using SPSS program. The results showed that the students trust the e-payment services but they lack the needed knowledge about the system and its usage. To over this deficiency, we recommend that local universities should provide training courses and specialized lectures given by experts in the field to the students. In addition, we recommend that local universities introduce new courses to the students in which they learn about e-commerce, e-banking and e-payment methods.
0.3857731819152832 Effects of a blend of essential oils in milk replacer on performance, rumen fermentation, blood parameters and health scores of dairy heifers Abstract The objective of this study was to evaluate how the inclusion of a blend of essential oils in milk replacer (MR) affects different outcomes of dairy heifers. The outcomes evaluated: feed intake, performance, body development, blood cells and metabolites, insulin-like growth factor-1 (IGF-1), rumen fermentation, fecal scores and respiratory scores. All outcomes were evaluated during pre-weaning (4 – 60 d of age), and carryover effects on post-weaning (61 – 90 d of age) periods. The experimental units utilized were 29 newborn Holstein × Gyr crossbred dairy heifers, with genetic composition of 5/8 or more Holstein and 3/8 or less Gyr and body weight (BW) at birth of 32.2 ± 5.2 kg. Experimental units were randomly assigned to either a control group (CON, n = 15) or a treatment group, consisting of supplementation of a blend of essential oils (BEO, n = 14) with1 g/d/calf (Apex Calf, Adisseo, China). During the pre-weaning phase, all heifers were fed 5 L of MR/d reconstituted at 15% (dry matter basis), divided into two equal meals. Water and starter were provided ad libitum . During the post-weaning, animals received a maximum 3 kg of starter/d, and ad libitum corn silage, divided into two meals. The outcomes feed intake, fecal and respiratory scores were evaluated daily. BW was measured every three days, while body development was recorded weekly. Blood samples were collected on 0, 30 and 60 d of age for total blood cell count, weekly to determinate ß-hydroxybutyrate, urea and glucose, and biweekly for IGF-1. Ruminal parameters (pH, volatile fatty acids, ammonia-N and acetate:proprionate proportion - C2:C3) were measured each 14 days. A randomized complete block design with an interaction between treatment and week was the experimental method of choice to test the hypothesis of effect of BEO on all outcomes. An ANOVA procedure was used for continuous outcomes and a non-parametric test was used for the ordered categorical outcomes both adopting a C.I. = 95%. Results indicated that there was not enough evidence to accept the alternative hypothesis of effect of BEO in MR on: feed intake, performance, body development and blood metabolites during both pre-weaning and post-weaning periods. However, results indicated that the inclusion of BEO in MR significantly affects the proportion of C2:C3 during pre and post-weaning (P ≤ 0.05). Similarly, the effect is significant for basophil (P ≤ 0.001) and platelet (P ≤ 0.05) counts in pre-weaning. The interaction between week and treatment was also significant for lymphocytes (P ≤ 0.001), revealing a long-term treatment immunological effect. Lastly, the effect on fecal scores was also significant (P ≤ 0.05) during pre-weaning, with lower values for BEO. BEO contributed for ruminal manipulation on pre-weaning and carry over effect on post-weaning; immunity improvement and a decrease morbidity of neonatal diarrhea in pre-weaning phase. Cf. https://www.sbert.net/docs/usage/semantic_textual_similarity.html
Pairwise comparision of documents
Detects duplicated content (like different versions of preprints) and publications that are similar in some aspect (topic, language, …).
Code
pairwise_scores = util.dot_score(embeddings[:100], embeddings[:100])
pairs = []
for i in range(len(pairwise_scores)-1):
for j in range(i+1, len(pairwise_scores)):
pairs.append({'index': [i, j], 'score': pairwise_scores[i][j]})
pairs = sorted(pairs, key=lambda x: x['score'], reverse=True)
def results(n=50, slen=120):
def shorten(s):
if len(s) < slen:
return s
else:
return s[:slen] + "..."
for pair in pairs[:n]:
i, j = pair['index']
yield {"i":i, "j":j, "s[i]": shorten(sentences[i]), "s[j]": shorten(sentences[j]), "score": float(pair['score'])}
results_df = pd.DataFrame(results())
results_df.to_html()| i | j | s[i] | s[j] | score | |
|---|---|---|---|---|---|
| 0 | 6 | 7 | An Optimization Method Combining RSSI and PDR Data to Estimate Distance Between Smart Devices Distance estimation method… | An Optimization Method Combining RSSI and PDR Data to Estimate Distance Between Smart Devices Distance estimation method… | 1.000000 |
| 1 | 25 | 26 | Free Energy Landscapes for RBD Opening in SARS-CoV-2 Spike Glycoprotein Simulations Suggest Key Interactions and a Poten… | Free Energy Landscapes for RBD Opening in SARS-CoV-2 Spike Glycoprotein Simulations Suggest Key Interactions and a Poten… | 1.000000 |
| 2 | 8 | 15 | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | 0.998892 |
| 3 | 14 | 24 | MEMOTIVASI DIRI DAN MENGEMBANGKAN POTENSI DIRI DIKALA PANDEMI <p>Tujuan penelitian ini adalah meningkatkan motivasi diri… | MOTIVASI BERPRESTASI MAHASISWA DI MASA PANDEMI <p>Pada masa pandemi Covid-19 ini, pembelajaran dilakukan secara daring d… | 0.910311 |
| 4 | 15 | 61 | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | MEMERANGI TITIK JENUH KULIAH ONLINE DI MASA PANDEMI COVID 19 <p>Wabah pandemi Covid-19 ini mengakibatkan setiap orang ha… | 0.900757 |
| 5 | 5 | 27 | Sars-CoV-2 Vaccines: Time to Consider a Child-Focused Strategy With the arrival of SARS-CoV-2 vaccines, a new stage of t… | Citizen science initiative points at childhood BCG vaccination as a risk factor for COVID-19 Current results do not prov… | 0.899988 |
| 6 | 5 | 65 | Sars-CoV-2 Vaccines: Time to Consider a Child-Focused Strategy With the arrival of SARS-CoV-2 vaccines, a new stage of t… | External validity of phase III trials on vaccines against SARS-CoV-2 to a middle-aged and elderly Western European popul… | 0.897312 |
| 7 | 8 | 10 | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | MUNCULNYA CULTURE SHOCK PADA MAHASISWA BARU DALAM PERKULIAHAN DARING SELAMA PANDEMI COVID-19 <p>Culture Shock adalah kon… | 0.895884 |
| 8 | 10 | 15 | MUNCULNYA CULTURE SHOCK PADA MAHASISWA BARU DALAM PERKULIAHAN DARING SELAMA PANDEMI COVID-19 <p>Culture Shock adalah kon… | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | 0.895678 |
| 9 | 41 | 71 | Sex differences and Psychological Stress: Responses to the COVID-19 epidemic in China <p><strong>Background</strong>Abo… | The effects of the COVID-19 pandemic on mental health: a web-based study among Romanian adults (Preprint) <sec> BACKGROU… | 0.893713 |
| 10 | 8 | 61 | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | MEMERANGI TITIK JENUH KULIAH ONLINE DI MASA PANDEMI COVID 19 <p>Wabah pandemi Covid-19 ini mengakibatkan setiap orang ha… | 0.890895 |
| 11 | 8 | 24 | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | MOTIVASI BERPRESTASI MAHASISWA DI MASA PANDEMI <p>Pada masa pandemi Covid-19 ini, pembelajaran dilakukan secara daring d… | 0.884889 |
| 12 | 66 | 75 | SARS-CoV-2-induced impaired immune response by Prostaglandin E2 is accelerated by age, male sex and air pollution <p>The… | SARS-CoV-2 Nsp5 Protein Causes Acute Lung Inflammation: A Mathematical Model In the present work we propose a mathematic… | 0.884857 |
| 13 | 64 | 87 | Factors that influence the duration of symptom resolution in COVID-19 patients in Ethiopia: A follow up study involving … | Unraveling COVID-19-related hospital costs: The impact of clinical and demographic conditions ABSTRACT Introduction Alt… | 0.884020 |
| 14 | 15 | 24 | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | MOTIVASI BERPRESTASI MAHASISWA DI MASA PANDEMI <p>Pada masa pandemi Covid-19 ini, pembelajaran dilakukan secara daring d… | 0.882654 |
| 15 | 64 | 70 | Factors that influence the duration of symptom resolution in COVID-19 patients in Ethiopia: A follow up study involving … | Mortality Rate Due to Pulmonary Fibrosis Associated with Sars-Cov-2 Infection: Scope of Best Fit Regression <p>In this a… | 0.880081 |
| 16 | 51 | 78 | Tipping the Scales: A Theoretical Model to Describe the Opposing Effects of the COVID-19 Pandemic on Mortality <p><stron… | Longitudinal variability in mortality predicts Covid-19 deaths Abstract Within Europe, death rates due to covid-19 vary … | 0.875515 |
| 17 | 14 | 15 | MEMOTIVASI DIRI DAN MENGEMBANGKAN POTENSI DIRI DIKALA PANDEMI <p>Tujuan penelitian ini adalah meningkatkan motivasi diri… | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | 0.874045 |
| 18 | 8 | 14 | DAMPAK PANDEMI COVID-19 TERHADAP SEKTOR PENDIDIKAN TERUTAMA BAGI PELAJAR <p>Pandemi covid-19 tentunya bukan hanya mereng… | MEMOTIVASI DIRI DAN MENGEMBANGKAN POTENSI DIRI DIKALA PANDEMI <p>Tujuan penelitian ini adalah meningkatkan motivasi diri… | 0.872154 |
| 19 | 42 | 89 | Sex differences in viral entry protein expression and host transcript responses to SARS-CoV-2 <p>Epidemiological studies… | Smoking and SARS-CoV-2 Impair Dendritic Cells and Regulate DC-SIGN Expression in Tissues Summary The current spreading n… | 0.870097 |
| 20 | 16 | 95 | Pregnancy during the pandemic: The impact of COVID-19-related stress on risk for prenatal depression <p>Pregnant women m… | Mechanisms of Parental Stress During and After the COVID-19 Lockdown: A two-wave longitudinal study <p>Background: In th… | 0.868622 |
| 21 | 63 | 80 | Optimality in COVID-19 vaccination strategies determined by heterogeneity in human-human interaction networks <p>Interac… | The interplay between subcritical fluctuations and import: understanding COVID-19 epidemiology dynamics Abstract The ef… | 0.866891 |
| 22 | 41 | 95 | Sex differences and Psychological Stress: Responses to the COVID-19 epidemic in China <p><strong>Background</strong>Abo… | Mechanisms of Parental Stress During and After the COVID-19 Lockdown: A two-wave longitudinal study <p>Background: In th… | 0.864205 |
| 23 | 80 | 83 | The interplay between subcritical fluctuations and import: understanding COVID-19 epidemiology dynamics Abstract The ef… | Simulating Retarded SEIRS model for COVID-19: will the second epidemic happen? Abstract In this paper, we want to simula… | 0.864152 |
| 24 | 31 | 68 | Public adherence to precautionary measures and preventive guidelines against COVID-19 in Sudan: An application of the He… | Adoption of Preventive Measures During the Very Early Phase of the COVID-19 Outbreak in China: National Cross-sectional … | 0.861506 |
| 25 | 79 | 84 | Genomic Diversity of the SARS-CoV-2 in Turkey and the Impact of Virus Genome Mutations on Clinical Outcomes Summary COVI… | S gene dropout patterns in SARS-CoV-2 tests suggest spread of the H69del/V70del mutation in the US Recently, multiple no… | 0.861408 |
| 26 | 2 | 3 | Twitter Users Display Desensitization to Bad Health News: An Observational Study (Preprint) <sec> BACKGROUND <p>Among th… | COVID-19 Vaccine Hesitancy in Canada: Content Analysis of Tweets Using the Theoretical Domains Framework (Preprint) <sec… | 0.858481 |
| 27 | 41 | 68 | Sex differences and Psychological Stress: Responses to the COVID-19 epidemic in China <p><strong>Background</strong>Abo… | Adoption of Preventive Measures During the Very Early Phase of the COVID-19 Outbreak in China: National Cross-sectional … | 0.857303 |
| 28 | 42 | 58 | Sex differences in viral entry protein expression and host transcript responses to SARS-CoV-2 <p>Epidemiological studies… | Intersection between ageing-related Genes and SARS-CoV-2 Interactome: Is it higher than expected? <p><strong>Background:… | 0.857153 |
| 29 | 75 | 89 | SARS-CoV-2 Nsp5 Protein Causes Acute Lung Inflammation: A Mathematical Model In the present work we propose a mathematic… | Smoking and SARS-CoV-2 Impair Dendritic Cells and Regulate DC-SIGN Expression in Tissues Summary The current spreading n… | 0.856863 |
| 30 | 66 | 89 | SARS-CoV-2-induced impaired immune response by Prostaglandin E2 is accelerated by age, male sex and air pollution <p>The… | Smoking and SARS-CoV-2 Impair Dendritic Cells and Regulate DC-SIGN Expression in Tissues Summary The current spreading n… | 0.852484 |
| 31 | 40 | 53 | COVID-19 – Protocol for Observational Studies Utilising Near Real-Time Electronic Australian General Practice Data to Pr… | Citizen workshops in public libraries to disseminate and discuss primary care research results: a scaling-up study <h2>B… | 0.852168 |
| 32 | 31 | 99 | Public adherence to precautionary measures and preventive guidelines against COVID-19 in Sudan: An application of the He… | EVALUATION OF KNOWLEDGE, ATTITUDES AND BEHAVIOURS ABOUT COVID-19 AMONG CANCER PATIENTS Background COVID-19 pandemic is e… | 0.849881 |
| 33 | 58 | 89 | Intersection between ageing-related Genes and SARS-CoV-2 Interactome: Is it higher than expected? <p><strong>Background:… | Smoking and SARS-CoV-2 Impair Dendritic Cells and Regulate DC-SIGN Expression in Tissues Summary The current spreading n… | 0.849775 |
| 34 | 17 | 95 | What drives beliefs in COVID-19 conspiracy theories? The role of psychotic-like experiences and confinement-related fact… | Mechanisms of Parental Stress During and After the COVID-19 Lockdown: A two-wave longitudinal study <p>Background: In th… | 0.848155 |
| 35 | 63 | 82 | Optimality in COVID-19 vaccination strategies determined by heterogeneity in human-human interaction networks <p>Interac… | Contact Tracing of COVID-19 in Karnataka, India: Superspreading and Determinants of Infectiousness and Symptomaticity Br… | 0.847457 |
| 36 | 81 | 85 | Staff to staff transmission as a driver of healthcare worker infections with COVID-19 ABSTRACT Objectives To investigat… | Acceptable Performance of the Abbott ID NOW Among Symptomatic Individuals with Confirmed COVID-19 INTRODUCTION Point of … | 0.845383 |
| 37 | 62 | 68 | Study on Awareness of COVID-19 and Compliance with Social Distancing during COVID-19 Pandemic in Indonesia <p>To slow do… | Adoption of Preventive Measures During the Very Early Phase of the COVID-19 Outbreak in China: National Cross-sectional … | 0.845025 |
| 38 | 27 | 65 | Citizen science initiative points at childhood BCG vaccination as a risk factor for COVID-19 Current results do not prov… | External validity of phase III trials on vaccines against SARS-CoV-2 to a middle-aged and elderly Western European popul… | 0.843634 |
| 39 | 16 | 41 | Pregnancy during the pandemic: The impact of COVID-19-related stress on risk for prenatal depression <p>Pregnant women m… | Sex differences and Psychological Stress: Responses to the COVID-19 epidemic in China <p><strong>Background</strong>Abo… | 0.843199 |
| 40 | 39 | 53 | Using Web Conferencing to Engage Aboriginal and Torres Strait Islander Young People in Research: A Feasibility Study <p>… | Citizen workshops in public libraries to disseminate and discuss primary care research results: a scaling-up study <h2>B… | 0.843191 |
| 41 | 70 | 75 | Mortality Rate Due to Pulmonary Fibrosis Associated with Sars-Cov-2 Infection: Scope of Best Fit Regression <p>In this a… | SARS-CoV-2 Nsp5 Protein Causes Acute Lung Inflammation: A Mathematical Model In the present work we propose a mathematic… | 0.842993 |
| 42 | 2 | 71 | Twitter Users Display Desensitization to Bad Health News: An Observational Study (Preprint) <sec> BACKGROUND <p>Among th… | The effects of the COVID-19 pandemic on mental health: a web-based study among Romanian adults (Preprint) <sec> BACKGROU… | 0.842328 |
| 43 | 71 | 73 | The effects of the COVID-19 pandemic on mental health: a web-based study among Romanian adults (Preprint) <sec> BACKGROU… | Youths’ and Parents’ Experiences and Perceived Effects of Internet-Based Cognitive Behavioral Therapy for Anxiety Disord… | 0.841731 |
| 44 | 63 | 83 | Optimality in COVID-19 vaccination strategies determined by heterogeneity in human-human interaction networks <p>Interac… | Simulating Retarded SEIRS model for COVID-19: will the second epidemic happen? Abstract In this paper, we want to simula… | 0.839534 |
| 45 | 14 | 19 | MEMOTIVASI DIRI DAN MENGEMBANGKAN POTENSI DIRI DIKALA PANDEMI <p>Tujuan penelitian ini adalah meningkatkan motivasi diri… | Komunikasi Termediasi dan Momentum Revitalisasi Pembelajaran Daring <p>Alkhajar, E. N. S. (2020). Komunikasi Termediasi … | 0.838842 |
| 46 | 24 | 61 | MOTIVASI BERPRESTASI MAHASISWA DI MASA PANDEMI <p>Pada masa pandemi Covid-19 ini, pembelajaran dilakukan secara daring d… | MEMERANGI TITIK JENUH KULIAH ONLINE DI MASA PANDEMI COVID 19 <p>Wabah pandemi Covid-19 ini mengakibatkan setiap orang ha… | 0.838382 |
| 47 | 17 | 71 | What drives beliefs in COVID-19 conspiracy theories? The role of psychotic-like experiences and confinement-related fact… | The effects of the COVID-19 pandemic on mental health: a web-based study among Romanian adults (Preprint) <sec> BACKGROU… | 0.837906 |
| 48 | 0 | 75 | The kidnapping of mitochondrial function associated to the SARS-CoV-2 infection <p>Severe Acute Respiratory Syndrome Cor… | SARS-CoV-2 Nsp5 Protein Causes Acute Lung Inflammation: A Mathematical Model In the present work we propose a mathematic… | 0.837089 |
| 49 | 34 | 53 | Conceptual Framework for Task Shifting and Task Sharing: An International Delphi Study <p><strong>Background</strong></p… | Citizen workshops in public libraries to disseminate and discuss primary care research results: a scaling-up study <h2>B… | 0.836426 |
Clustering
Compute or load clusters
# cf. https://github.com/UKPLab/sentence-transformers/blob/master/examples/applications/clustering/fast_clustering.py
if COMPUTE_CLUSTERS:
print("Start clustering")
start_time = time.time()
#Two parameters to tune:
#min_cluster_size: Only consider cluster that have at least 25 elements
#threshold: Consider sentence pairs with a cosine-similarity larger than threshold as similar
clusters = util.community_detection(torch.Tensor(embeddings), min_community_size=100, threshold=0.85, batch_size=1024)
print("Clustering done after {:.2f} sec".format(time.time() - start_time))
with open(OUTPUT_FILE_CLUSTERS, "w") as f:
f.write(json.dumps(clusters))
else:
with open(OUTPUT_FILE_CLUSTERS, "r") as f:
clusters = json.load(f)Print summary of clusters
#Print for all clusters the top 3 and bottom 3 elements
def sanitize(s):
s = re.sub("<[^>]*>", "", s)
s = s.replace("\n", " ")
return re.escape(s)
for i, cluster in enumerate(clusters):
print("#### Cluster {} ({} Elements) \n\n".format(i+1, len(cluster)))
for sentence_id in cluster[0:3]:
print("- ", sanitize(sentences[sentence_id][:80]), "...", "\n")
print("...", "\n")
for sentence_id in cluster[-3:]:
print("- ", sanitize(sentences[sentence_id][:80]), "...", "\n")Cluster 1 (4048 Elements)
Citizen science initiative points at childhood BCG vaccination as a risk factor …
Optimality in COVID-19 vaccination strategies determined by heterogeneity in hum …
Factors that influence the duration of symptom resolution in COVID-19 patients i …
…
From SARS-CoV to Wuhan 2019-nCoV Outbreak: Similarity of Early Epidemic and Pred …
Estimation of the Transmission Risk of 2019-nCov and Its Implication for Public …
Legal Pitfalls In Response to 2019 Novel Coronavirus Since its emergence from Wu …
Cluster 2 (960 Elements)
Pulmonary cavitation – an under-recognized late complication of severe COVID-19 …
Evaluation of Convalescent Plasma Versus Standard of Care for the Treatment of C …
Baidu Jieduan granule, traditional Chinese medicine, in the treatment of moderat …
…
2019-nCoV Pneumonia in a Normal Work Infectious Diseases Hospital Besides Hubei …
Clinical and High-Resolution CT Features of the Severe Acute Respiratory Syndrom …
Clinical Features and Computed Tomographic Manifestations of Patients with 2019 …
Cluster 3 (948 Elements)
Pregnancy during the pandemic: The impact of COVID-19-related stress on risk for …
What drives beliefs in COVID-19 conspiracy theories? The role of psychotic-like …
Sex differences and Psychological Stress: Responses to the COVID-19 epidemic in …
…
Psychological Effects of COVID-19 on Hospital Staff: A National Cross-Sectional …
Mental Health Problems and Social Media Exposure During COVID-19 Outbreak Backgr …
The Psychological Impact of Quarantine and How to Reduce It: Rapid Review of the …
Cluster 4 (866 Elements)
Pediatric infected with 2019 coronavirus: A referral center study on 21 pediatri …
Chronic Anticoagulation is not Associated with a Reduced Risk of Acute Kidney In …
Post-exposure Prophylaxis Against SARS-CoV-2 in Close Contacts of Confirmed COVI …
…
Clinical Efficacy of Arbidol in Patients with 2019 Novel Coronavirus-Infected Pn …
Clinical Characteristics Predicting Progression of COVID-19 Background: With the …
Epidemiological and Clinical Characteristics of 99 Cases of 2019-Novel Coronavir …
Cluster 5 (849 Elements)
SARS-CoV-2 Nsp5 Protein Causes Acute Lung Inflammation: A Mathematical Model In …
Genomic Diversity of the SARS-CoV-2 in Turkey and the Impact of Virus Genome Mut …
Smoking and SARS-CoV-2 Impair Dendritic Cells and Regulate DC-SIGN Expression in …
…
Immunoglobulin G/M and Cytokines Detections in Continuous Sera from Patients wit …
Longitudinal Characteristics of Lymphocyte Responses and Cytokine Profiles in th …
Rapid Detection of Novel Coronavirus (COVID19) by Reverse Transcription-Loop-Med …
Cluster 6 (772 Elements)
Factors Defining the Development of Severe Illness in Patients with COVID-19: A …
Age is not the only risk factor in COVID-19: the role of comorbidities and of lo …
Efficacy and Safety of Tocilizumab in Patients with COVID-19 : A Systematic Revi …
…
Analysis of 2019-nCoV Infection and Clinical Manifestations of Outpatients: An E …
Clinical Characteristics of 5732 Patients with 2019-nCoV Infection Objective: to …
Analysis of 2019 Novel Coronavirus Infection and Clinical Characteristics of Out …
Cluster 7 (604 Elements)
Prognostic and predictive biomarkers in patients with COVID-19 treated with toci …
Comparative study of hematological and radiological feature of severe/critically …
Effects of Tocilizumab in COVID-19 patients: a cohort study Background: Due t …
…
Clinical Characteristics of 60 COVID-19-Infected Patients with or Without Renal …
Characteristics of Peripheral Lymphocyte Subset Alteration in 2019-nCoV Pneumoni …
Clinical and Imaging Evidence of Wuhan-Viral Pneumonia: A Large-Scale Prospectiv …
Cluster 8 (572 Elements)
Discovery of TMPRSS2 inhibitors from virtual screening The SARS-CoV-2 pandemic h …
Phytochemicals as Therapeutics Against COVID-19: An In-Silico Study Since Decemb …
Losartan promotes cell survival following SARS-CoV-2 infection in vitro Abstract …
…
Missense Mutations in SARS-CoV2 Genomes from Indian Patients As on May 24, 2020, …
Probing Occurrence and Possible Roles of New Insert in Spike Glycoprotein of SAR …
Vulnerabilities of the SARS-CoV-2 Virus to Proteotoxicity — Opportunity for Repu …
Cluster 9 (419 Elements)
Oil Price and Covid-19: Pandemic Vs Epidemic The objective of this study is t …
COVID-19 and Insurance market returns in emerging and developed markets: A compa …
Multivariate Analysis of COVID-19 on Stock, Commodity & Purchase Manager Indices …
…
Coronavirus: Impact on Stock Prices and Growth Expectations We use data from the …
Statistica descriptivă a seriilor de timp financiare: Aplicaţii, Partea a doua ( …
Feverish Stock Price Reactions to COVID-19 This paper studies how markets adjust …
Cluster 10 (395 Elements)
Structural basis for broad coronavirus neutralization Three highly pathogenic β- …
Evaluation of the Effect of D614g, N501y and S477n Mutation in Sars-Cov-2 throug …
SARS-CoV-2 mutations among minks show reduced lethality and infectivity to human …
…
The MERS-CoV Receptor DPP4 as a Candidate Binding Target of the SARS-CoV-2 Spike …
Evolutionary Analysis of SARS-2-CoV: How Mutation of Non-Structural Protein 6 (N …
Understanding the Nature of Variations in Structural Sequences coding for Corona …
Cluster 11 (386 Elements)
Knowledge and Level of Adherence to COVID-19 Preventive Measures: A Bi-national …
The interplay between vaccination and social distancing strategies affects COVID …
Mathematical Models for Assessing Vaccination Scenarios in Several Provinces in …
…
How A Massive Contagious Infectious Diseases Can Affect Tourism, International T …
Effects of Corona Virus on the World Community The study was carried out since F …
The Impact of Infectious and Contagious Diseases and Its Impact on the Economic …
Cluster 12 (369 Elements)
SARS-CoV-2 highly conserved s2m element dimerizes via a kissing complex and inte …
An in Silico Scientific Basis for LL-37 as a Therapeutic and Vitamin D as Preven …
In silico evaluation of isatin-based derivatives with RNA-dependent RNA polymera …
…
Molecular Modeling Evaluation of the Binding Effect of Ritonavir, Lopinavir and …
Nelfinavir was predicted to be a potential inhibitor of 2019-nCov main protease …
COVID-19 and Flavonoids: In Silico Molecular Dynamics Docking to the Active Cata …
Cluster 13 (343 Elements)
MEMERANGI TITIK JENUH KULIAH ONLINE DI MASA PANDEMI COVID 19 Wabah pandemi Co …
H2V: a database of human genes and proteins that respond to SARS-CoV-2, SARS-CoV …
Host’s Specific SARS-CoV-2 Mutations: Insertion of the Phenylalanine in the NSP6 …
…
A Parsimonious Identification of SARS-CoV-2 and Host Interactions Effective coun …
BLUE PAPER: COVID-19 Quick-Test In the light of the current global situation, a …
Probable Pangolin Origin of 2019-nCoV Associated with Outbreak of COVID-19 In th …
Cluster 14 (318 Elements)
A New State-Space Epidemiological Model for Cost-Effectiveness Analysis of Non-M …
Short-term forecasting of COVID-19 in Germany and Poland during the second wave …
Does COVID-19 Testing Create More Cases? An Empirical Evidence on the Importance …
…
An SEIR Infectious Disease Model with Testing and Conditional Quarantine We exte …
Utilize State Transition Matrix Model to Predict the Novel Corona Virus Infectio …
‘STOP COVID-19’: An Actionable Plan to Stop the Pandemic. Why Stopping the Pande …
Cluster 15 (276 Elements)
The interplay between subcritical fluctuations and import: understanding COVID-1 …
CovidSIMVL --Transmission Trees, Superspreaders and Contact Tracing in Agent Bas …
When might Host Heterogeneity Drive the Evolution of Asymptomatic, Pandemic Coro …
…
Public Health Intervention Framework for Reviving Economy Amid the COVID-19 Pand …
COVID-19 and the Future of the United States As a World Leader Much of the long- …
Containing the Virus or Reviving the Economy? Evidence from Individual Expectati …
Cluster 16 (241 Elements)
Mask-Wearing During the COVID-19 Pandemic Masks have been widely recommended …
Structural Inequities in Seasonal Influenza Vaccination Rates Background< …
Predictors for County Level Variations in Initial 4-week COVID-19 Incidence and …
…
Are We #StayingHome to Flatten the Curve? The spread of COVID-19 across the U.S. …
Documenting the Challenges (and Documents) As Ohio Courts Respond to COVID-19 As …
Financial Vulnerability During a Pandemic: Insights for Coronavirus Disease (COV …
Cluster 17 (225 Elements)
Inefficient Procurement in Times of Pandemia The public health and economic c …
How to Get Away with Spreading COVID-19: Political Connections and Pandemic Resp …
Reverse Party Favoritism in Times of Pandemics: Evidence from Poland There is …
…
COVID-19 Pandemic, Direct Cash Transfers, and the Federal Reserve Over the past …
EU Competition Law and COVID-19 This paper explores how EU competition law enfor …
The Limits of Infrastructure Stimulus There is renewed interest in a significant …
Cluster 18 (221 Elements)
SARS-CoV-2 infection induces long-lived bone marrow plasma cells in humans Infec …
Patterns of seroconversion for SARS-CoV2-IgG in patients with malignant disease …
SARS-CoV-2 escape in vitro from a highly neutralizing COVID-19 convalescent plas …
…
The Impact of Natural and Glycosylation Mutations in the SARS-CoV-2 Spike Protei …
SARS-CoV-2 Epitopes are Recognized by a Public and Diverse Repertoire of Human T …
Safety, Tolerability and Immunogenicity of a Recombinant Adenovirus Type 5 Vecto …
Cluster 19 (219 Elements)
Public adherence to precautionary measures and preventive guidelines against COV …
The Impacts of Coronavirus Disease 2019 Outbreak on Sexual and Reproductive Heal …
SARS-CoV-2 among migrants and forcibly displaced populations: a rapid systematic …
…
Curative Measures & Regulations by the Nigerian Government Amid COVID-19 Outbrea …
The Outbreak of Novel Coronavirus in India: Psychological Impact The outbreak of …
School Closure and Management Practices During Coronavirus Outbreaks Including C …
Cluster 20 (218 Elements)
Higher SARS-CoV-2 Seroprevalence in Workers with Lower Socioeconomic Status in C …
Salivary SARS-CoV-2 antigen rapid detection: a prospective cohort study Abstract …
Engineered CRISPR/Cas12a Enables Rapid SARS-CoV-2 Detection ABSTRACT The corona …
…
Verifying Protective Immunity Against SARS-CoV-2: Assessment of Serological Anti …
Evaluation of Novel Antigen-Based Rapid Detection Test for the Diagnosis of SARS …
Detecting SARS-CoV-2 at Point of Care: Preliminary Data Comparing Loop-Mediated …
Cluster 21 (203 Elements)
Mortality Rate Due to Pulmonary Fibrosis Associated with Sars-Cov-2 Infection: S …
Reducing contacts to stop SARS-CoV-2 transmission during the second pandemic wav …
Social and racial inequalities in COVID-19 risk of hospitalisation and death acr …
…
The Effect of Control Strategies that Reduce Social Mixing on Outcomes of the CO …
Multiple Infections and Lung Damage Models Imply Strategies for Containing the C …
Strategies for Surviving in the Coming Coronaviruses Outbreak The coronaviruses …
Cluster 22 (194 Elements)
The Ramifications of the Treasury Single Account, the Ifmis Platform, and Govern …
The Ramifications of the Treasury Single Account, the Ifmis Platform, and Govern …
Universal Ownership and Systemic Risks The COVID-19 crisis has laid bare many pr …
…
Bankruptcy’s Role in the COVID-19 Crisis Policymakers have minimized the role of …
Why We Need a National Investment Authority This brief memorandum lays out the c …
Judicial Efficiency and Lending Quality The worldwide diffusion of Covid-19 viru …
Cluster 23 (189 Elements)
Health care workers depression and associated factors during COVID-19. Health fa …
Working condition and health status of 6,317 front line public health workers du …
Investigation on psychological behavior, work stress and social support of front …
…
Multiple Risk Factors of Depression and Anxiety in Medical Staffs: A Cross-Secti …
The Prevalence and Influencing Factors for Anxiety in Medical Workers Fighting C …
Perceived Social Support and Its Impact on Psychological Status and Quality of L …
Cluster 24 (187 Elements)
An in Silico Scientific Basis for LL-37 as a Therapeutic and Vitamin D as Preven …
COVID-19 Point-of-Care Diagnostics that Satisfy Global Target Product Profiles C …
Human neutralizing antibodies against SARS-CoV-2 require intact Fc effector func …
…
COVID-19 Patients Form Memory CD8+ T Cells that Recognize a Small Set of Shared …
Further Important Characteristics of the SARS-CoV-2 IgG and IgA Antibody Respons …
Human Challenge Trial (HCT) for COVID-19 Vaccine Development; How possible is it …
Cluster 25 (185 Elements)
SARS-CoV-2 RNA quantification using droplet digital RT-PCR Abstract Quantitativ …
Several forms of SARS-CoV-2 RNA can be detected in wastewaters : implication for …
Technical framework for wastewater-based epidemiology of SARS-CoV-2 based on rel …
…
Feasibility of Pooled Testing in a Fully Automated High Throughput Platform for …
Detection of SARS-CoV-2 Infection by Multicapillary Column Coupled Ion Mobility …
Mass Screening of Asymptomatic Persons for SARS-CoV-2 Using Saliva Background: C …
Cluster 26 (182 Elements)
SARS-CoV-2-induced impaired immune response by Prostaglandin E2 is accelerated b …
Broad Auto-Reactive IgM Responses Are Common In Critically Ill COVID-19 Patients …
Characterization of cell-cell communication in COVID-19 patients Abstract COVID- …
…
Elevated Glucose Levels Favor Sars-Cov-2 Infection and Monocyte Response Through …
Plasma Cells and Endothelitis in COVID-19 Lung Pathology Histopathology is a pow …
The Inhibition of IL-2/IL-2R Gives Rise to CD8+T Cell and Lymphocyte Decrease Th …
Cluster 27 (181 Elements)
Adoption of Preventive Measures During the Very Early Phase of the COVID-19 Outb …
Assessment of self-medication practices in the context of COVID-19 outbreak in T …
Willingness to Receive Future Covid-19 Vaccines Following the Covid-19 Epidemic …
…
Public Response for Information and Education Systems Prevent Spread of COVID-19 …
Social and Moral Responsibility of the Individuals, Governments, and the Protect …
Use of a Community-Based Cohort for Rapid and Repeated Assessments of Public Kno …
Cluster 28 (178 Elements)
Secondary Metabolites from Caulerpa Cylindracea (Sonder) Could Be Alternative Na …
Pharmacophore-based peptide biologics neutralize SARS-CoV-2 S1 and deter S1-ACE2 …
Secondary Metabolites from Caulerpa Cylindracea (Sonder) Could Be Alternative Na …
…
Inhibition of Acid Sphingomyelinase Blocks Infection with SARS-CoV-2 We have pre …
Metadichol®, A Novel Nano Lipid Formulation that Inhibits SARS-CoV-2 and a Multi …
Androgen-driven COVID-19 Pandemic Theory This theory article introduces the plau …
Cluster 29 (177 Elements)
Sars-CoV-2 Vaccines: Time to Consider a Child-Focused Strategy With the arrival …
S gene dropout patterns in SARS-CoV-2 tests suggest spread of the H69del/V70del …
Emerging SARS-CoV-2 diversity revealed by rapid whole genome sequence typing BAC …
…
SARS-CoV-2 Infection and Transmission in Educational Settings: Cross-Sectional A …
Rapid Whole Genome Sequence Typing Reveals Multiple Waves of SARS-CoV-2 Spread B …
SARS CoV 2 Mass Testing Endangers Residents of Long-Term Care Facilities Mass-te …
Cluster 30 (176 Elements)
Impactos da pandemia Covid-19 em empresas de grande porte: avaliação das mudança …
Knowledge, attitudes, and perceptions of the Greek population regarding the COVI …
Impact of COVID-19 on Health Services Utilization in Province-2 of Nepal: A Qual …
…
‘Twalingana’: We Have Become Equal in COVID 19 The question we need to answer in …
A Critical COVID-19 Economic Policy Tool: Retrospective Insurance The COVID-19 p …
Are We Ready to Lose the Opportunities Unleashed by COVID19 Crisis? As every cri …
Cluster 31 (174 Elements)
Predicting the COVID-19 patients’ status using chest CT scan findings: A risk as …
Viremia and Interaction of Endothelial Cells, Erythrocytes, Leukocytes and Plate …
International Comparisons of Harmonized Laboratory Value Trajectories to Predict …
…
Urinalysis, but not Blood Biochemistry, Detects the Early Renal-Impairment in Pa …
Clinical and CT Features of Corona Virus Disease 2019 in Different Age Groups Ba …
The Viral Load of 2019 Novel Coronavirus (COVID-19) Has the Potential to Predict …
Cluster 32 (169 Elements)
Conceptual Framework for Task Shifting and Task Sharing: An International Delphi …
The Experience of Australian General Practice Patients at High Risk of Poor Heal …
Women’s Experience of Pregnancy and Birth during the Covid-19 Pandemic: A Qualit …
…
Factors Affecting Patients’ Perceptions of Quality, Hospital Ratings, and some T …
The Poverty of Bioethics: Disability, Medical Austerity, and Traumatic Care Amid …
Fault-Lines in the Public Health Approach to Covid-19: Recognizing Inequities an …
Cluster 33 (167 Elements)
Comparative analysis of loop-mediated isothermal amplification (LAMP)-based assa …
A DNA intercalating dye-based RT-qPCR alternative to diagnose SARS-CoV-2 A bstr …
Error Rates in SARS-CoV-2 Testing Examined with Bayesian Inference Abstract A l …
…
ddPCR: a more sensitive and accurate tool for SARS-CoV-2 detection in low viral …
Sensitivity and Efficiency of RNA Sample Pooling for RT-qPCR Testing for SARS-Co …
Observational Study of Drive Through Mass Testing and Timely Detection of COVID- …
Cluster 34 (163 Elements)
Tipping the Scales: A Theoretical Model to Describe the Opposing Effects of the …
The COVID-19 Pandemic: Socioeconomic and Health Disparities Disadvantaged groups …
COVID-19 Outbreaks and Age Mortality Patterns As of the Fall of 2020, many co …
…
The Effects of Health Spending on the Propagation of Infectious Diseases Unravel …
The Application of COVID-19 National Respond Index (CNR-Index) under Country Lev …
COVID-19 疫情下的“战疫债”深度分析 ——基于 Copula 模型的信用利差视角* (An In-Depth Analysis of the Chine …
Cluster 35 (161 Elements)
Screening a library of FDA-approved and bioactive compounds for antiviral activi …
Real-time monitoring epidemic trends and key mutations in SARS-CoV-2 evolution b …
Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV …
…
TMBIM6, A Potential Virus Target Protein Identified by Integrated Multiomics Dat …
ACE2 Co-Evolutionary Pattern Suggests Targets for Pharmaceutical Intervention in …
Two Potential Novel SARS-CoV-2 Entries, TMPRSS2 and IFITM3, in Healthy Individua …
Cluster 36 (157 Elements)
Combatting with Challenges in Medical Education During COVID-19 Pandemic: A Mixe …
Evaluation of a massive open online course for just-in-time training in resource …
Adapting Medical Education Initiatives Through Team-Based e-Learning, Telemedici …
…
On Reimagining a Future for Online Learning in the Post-COVID Era Over the past …
Guiding Teaching Strategies with the Education Platform during the COVID-19 Epid …
A Quick-Start Guide to Teaching Online This guide is intended to help you move t …
Cluster 37 (152 Elements)
Six-month follow-up of functional status in discharged patients with coronavirus …
“Multimodal” Imaging Performance and Clinical Application of Coronavirus Disease …
COVID-19 Associated Bronchiectasis and its Impact on Prognosis. COVID-19 associa …
…
Clinical Outcomes of Patients with 2019-nCoV: A Preliminary Summary Background: …
Plasminogen Improves Lung Lesions and Hypoxemia in Patients with COVID-19 Backgr …
A Preliminary Study on the Ultrasonic Manifestations of Peripulmonary Lesions of …
Cluster 38 (152 Elements)
Study on Awareness of COVID-19 and Compliance with Social Distancing during COVI …
Empathy not quarantined: Association between people’s empathy to others and the …
DAMPAK PSIKOLOGIS PADA MAHASISWA BARU TERHADAP PEMBELAJARAN DARING DI MASA PANDE …
…
A Commentary on Psychological Factors Affecting Pro-Social Behaviors: What Can W …
Responding to COVID‐19: How to Navigate a Public Health Emergency Legally and Et …
The Influence of Efficacy Beliefs on Interpersonal Loneliness Among Front-Line H …
Cluster 39 (151 Elements)
COVID-19 Vaccine Hesitancy in Canada: Content Analysis of Tweets Using the Theor …
Quantifying the online news media coverage of the COVID-19 pandemic Abstract Ba …
Understanding Health Communication Through Google Trends and News Coverage for C …
…
There Must Be a Culpable Behind the Scenes; a Novel Trend in Misinformation Diff …
Perception of Emergent Epidemic of COVID-2019 / SARS CoV-2 on the Polish Interne …
Social Media Messages Related to COVID-19: A Content Analysis This is a prelimin …
Cluster 40 (150 Elements)
Mechanisms of Parental Stress During and After the COVID-19 Lockdown: A two-wave …
Using Fear and Anxiety Related to COVID-19 to Predict Cyberchondria: Cross-secti …
Factors Associated with Longitudinal Psychological and Physiological Stress in H …
…
Social, Cognitive, and Emotional Predictors of Adherence to Physical Distancing …
Social Isolation In The COVID-19 Pandemic – Is Maintaining Social Connections On …
Fear, Worry and Workplace Harassment Related to the COVID-19 Epidemic Among Empl …
Cluster 41 (150 Elements)
Intersection between ageing-related Genes and SARS-CoV-2 Interactome: Is it high …
Intersection between ageing-related Genes and SARS-CoV-2 Interactome: Is it high …
Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 gen …
…
Systemic Analysis of Tissue Cells Potentially Vulnerable to Sars-Cov-2 Infection …
Detection of 2019-nCoV in Saliva and Characterization of Oral Symptoms in COVID- …
Detection of 2019-nCoV in Saliva and Characterization of Oral Symptoms in COVID- …
Cluster 42 (146 Elements)
Implications of Cardiac Markers in Risk-Stratification and Management for COVID- …
Age and Multimorbidities as Poor Prognostic Factors for COVID-19 in Hemodialysis …
Association Between Risk of VTE and Mortality in Patients with COVID-19 <stro …
…
Blood Glucose Is a Representative of the Clustered Indicators of Multi-Organ Inj …
Prevalence of Acute Kidney Injury in Severe and Critical COVID-19 Patients in Wu …
More Than Pneumonia, The Potential Occurrence of Multiple Organ Failure in 2019 …
Cluster 43 (145 Elements)
Twenty Years of Integrated Disease Surveillance and Response in Sub-Saharan Afri …
Estimation of Years of Life Lost by Sweden’s Relaxed COVID-19 Mitigation Strateg …
The Economic Impact from the Decreasing Population Mobility of China’s Mainland …
…
Globalization and Pandemics: The Case of COVID-19 This paper analyzes the impact …
Responding to COVID-19 Through Socialist(ic) Measures: A Preliminary Review When …
The Application of the 2019-nCoV Global Economic Impact Simulator (the 2019-nCoV …
Cluster 44 (143 Elements)
Understanding How Communities Respond to COVID-19: Experiences from the Orthodox …
The Impact of the COVID-19 Pandemic on the Uptake of Influenza Vaccine: UK-Wide …
Acceptability of Government Measures Against Covid-19 Pandemic in Senegal: a Mix …
…
Rights-Based Approaches to Preventing, Detecting, and Responding to Infectious D …
Respuestas de Supervisores y Reguladores Financieros al COVID-19 (Financial Regu …
When Public Health Is Eroded by Junk Science: Muzzling Anti-Vaxxer FEAR Speech - …
Cluster 45 (142 Elements)
Мобильные комплексы СПЭБ Роспотребнадзора как действенный инструмент при реализа …
ПРОБЛЕМА ДНК(РНК)-КОНТАМИНАЦИИ В ЛАБОРАТОРИИ ПРИ ПРОВЕДЕНИИ ДИАГНОСТИКИ COVID-19 …
ТАКТИКА ОРГАНИЗАЦИИ ЛАБОРАТОРНОЙ ДИАГНОСТИКИ COVID-19 ПРИ ПРОВЕДЕНИИ ПРОТИВОЭПИД …
…
Эпидемии и изменяющийся мировой порядок: Китай и его восприятие западными наблюд …
Национален план за заетостта в България – политики, приоритети и необходимост от …
О некоторых аргументах в пользу жесткого и продолжительного карантина как средст …
Cluster 46 (139 Elements)
Quantum Deep Learning Functional Similarities on Remdesivir, Drug Synergies to T …
Naturally occurring phytochemical as inhibitors from Catharanthus roseus: An In- …
First-described recently discovered non-toxic vegetal-derived furocoumarin precl …
…
Molecular Docking Analysis of Chloroquine and Hydroxychloroquine and Design of A …
In Silico Computational Screening of Kabasura Kudineer - Official Siddha …
Large-Scale Ligand-Based Virtual Screening for SARS-CoV-2 Inhibitors Using Deep …
Cluster 47 (136 Elements)
Surveillance of acute SARS-CoV-2 infections in school children and point-prevale …
Routine SARS-CoV-2 wastewater surveillance results in Turkey to follow Covid-19 …
SARS-CoV-2 infections among personnel providing home care services for the elder …
…
Cluster of COVID-19 in Northern France: A Retrospective Closed Cohort Study Back …
Potential Role of Personal Protective Equipment Use in the Protection Against CO …
Rapid Implementation of a SARS-CoV-2 Diagnostic qRT-PCR Test with Emergency Use …
Cluster 48 (136 Elements)
Sex differences in viral entry protein expression and host transcript responses …
Meta-analysis of virus-induced host gene expression reveals unique signatures of …
Design of Specific Primer Set for Detection of B.1.1.7 SARS-CoV-2 Variant using …
…
In silico Approach Toward the Identification of Unique Peptides from Vira …
ACE2 and TMPRSS2 Variants and Expression as Candidates to Sex and …
SARS-CoV-2 Receptor ACE2 is an Interferon-Stimulated Gene in Human Airway Epithe …
Cluster 49 (135 Elements)
Cultural influence on COVID-19 cognitions and growth speed: the role of cultural …
Perceived Fear of COVID-19 and its Associated Factors Among Nepalese Older Adult …
The Role of Social Capital on Covid-19 Deaths Background: Co …
…
Coronavirus and Carbon Transition for Developing Economies The coronavirus, (COV …
Geo-Temporal, Network Properties of the Chinese COVID-19 Epidemic Background: To …
What Will Be the Future Effect of Wuhan Corona-Virus? I tried to analyze the sta …
Cluster 50 (130 Elements)
Macrolevel Association of COVID-19 with Non-Communicable Disease Risk Factors in …
Social disparities in the first wave of COVID-19 infections in Germany: A county …
Large-Scale Measurement of Aggregate Human Colocation Patterns for Epidemiologic …
…
Economic Contact Intensity Index for India In a remarkable feat, India has been …
COVID-19 Stresses United States on Domestic Borders; War Analog Might Foster Sta …
Does Social Distancing Matter? This paper estimates and monetizes the impact of …
Cluster 51 (126 Elements)
Negative vaccine attitudes and intentions to vaccinate against Covid-19 in relat …
The Persistence of Vaccine Hesitancy: COVID-19 Vaccination Intention Abstract …
Is it riskier to meet 100 people outdoors or 14 people indoors? Comparing public …
…
Driving Public Compliance with the Health Policy of Social Distancing: The Case …
The Impact of Political Ideology on Concern and Behavior During COVID-19 Beliefs …
Economic Preferences during a Global Crisis: Evidence from Wuhan We conducted a …
Cluster 52 (124 Elements)
Dynamics of a dual SARS-CoV-2 strain co-infection on a prolonged viral shedding …
Identification of eight SARS-CoV-2 ORF7a deletion variants in 2,726 clinical spe …
Pandemi Corona dalam Islam Corona, Virus ini telah menyebar di 198 negara. Di …
…
Encephalitis May Complicate COVID 19 Coronavirus disease 2019 (COVID-19) is a pa …
7 Immediate Strategies to Control the Coronavirus. Exploiting Viral Thermolabity …
Tropism of the Novel Coronavirus SARS-CoV-2 in Human Respiratory Tract: An Analy …
Cluster 53 (123 Elements)
Public participation in crisis policymaking. How 30,000 Dutch citizens advised t …
Climate change, marginalised communities and considered debate within Scotland’s …
O isolamento social durante a pandemia do Sars-Cov-2 aumenta ou diminui a poluiç …
…
Central-Local Balance in COVID-19 Response: Quick Review of Issues Balancing the …
Konstitutionel Nødret – Covid 19-Virus I Danmark Og I Dansk Forfatningsret? (Con …
Is Form Substance? Some Considerations on the Management of the COVID-19 Emergen …
Cluster 54 (121 Elements)
Analysis and Forecasting of Global RT-PCR Primers for SARS-CoV-2 ABSTRACT Rapid …
Analyzing the vast coronavirus literature with CoronaCentral The global SARS-CoV …
Genomic diversity analysis of SARS-CoV-2 genomes in Rwanda Abstract COVID-19 (Co …
…
COVID-19 and India India has a comparatively lower number of active cases compar …
Impact of Corona Virus Outbreak on Malaysian Trade The novel coronavirus strain …
Possibilities for Coronavirus (COVID 19) – The Perspectives As coronavirus (CoV) …
Cluster 55 (121 Elements)
Evaluation of Patients With Covid-19 Diagnosis for Chronic Diseases A …
Clinical Characteristics of Mechanically Ventilated Patients Treated in Non-ICU …
Effect of COVID-19 on Critical ICU Capacity in US Acute Care Hospitals Abstract …
…
Clinical Outcomes of COVID-19 Positive Patients Who Underwent Surgery: The New Y …
Oxygen Metabolism Score Directed Respiratory Support for 2019 Novel Coronavirus …
Multi-Organ Damage of Critically Ill Patients with Hyoxemia Affected by SARS-CoV …
Cluster 56 (118 Elements)
Computing Infection Distributions and Longitudinal Evolution Patterns in Lung CT …
Rapid COVID-19 Diagnosis Using Deep Learning of the Computerized Tomography Scan …
LungAI: A Deep Learning Convolutional Neural Network for Automated Detection of …
…
COVID-19 Detection from Chest X-Ray Images Using CNNs Models: Further Evidence f …
Lung Cancer Diagnosed by Artificial Intelligence, But It Was Actually COVID-19: …
Predicting COVID-19 Malignant Progression with AI Techniques Background: The cor …
Cluster 57 (117 Elements)
Addressing Personal Protective Equipment (PPE) Decontamination: Methylene Blue a …
N95 Filtering Facepiece Respirators Remain Effective After Extensive Reuse Durin …
International observational survey of the effectiveness of personal protective e …
…
COVID-19: State and Local Responses to PPE Shortages In mid-March, healthcare wo …
Testing of Safety and Ease of Use of an Adjusted Full Face Snorkel Mask as Prote …
An Accessible Method for Screening Aerosol Filtration Identifies Poor-Performing …
Cluster 58 (116 Elements)
Collective Anxieties of Canadians During The COVID-19 Pandemic: The Angst-Free a …
A Blueprint for a Green Future - Multidisciplinary report on a green recovery fr …
Is COVID-19 a Threat to Liberal Democracy? A defining feature of liberal demo …
…
China Sneezes the World Catches a Cold-CEMAC When China sneezes the world catche …
Terrestrial and Celestial Forces Expose Vulnerable Economists: Financial Crisis …
Economic Waves: The Effect of the Wuhan COVID-19 on the World Economy (2019-2020 …
Cluster 59 (116 Elements)
Unequal but Balanced: Highly educated mothers’ perceptions of work-life balance …
Changes in work culture and workplace due to COVID19 crisis Across the world …
‘Two hours extra for working from home’: Reporting on gender, space, and time fr …
…
Labor Markets During the COVID-19 Crisis: A Preliminary View We use a repeated l …
Italian Workers at Risk during the COVID-19 Epidemic We analyse the content of I …
Working from Home Under Social Isolation: Online Content Contributions During th …
Cluster 60 (114 Elements)
Financial Hardship and Social Assistance as Determinants of Mental Health and Fo …
Impact of housing conditions on changes in youth’s mental health following the i …
The Relationship between Nature Deprivation and Individual Wellbeing across Urba …
…
Stay-at-Home Works to Fight Against COVID-19: International Evidence from Google …
Risk Perception Through the Lens of Politics in the Time of the COVID-19 Pandemi …
Supporting Growth, Restoring Confidence: A Shadow Federal Budget for 2020 Early …
Cluster 61 (112 Elements)
COVID-19 Associated Mortality and Cardiovascular Disease Outcomes Among U.S. Wom …
Clinical outcomes and risk factors for COVID-19 among migrant populations in hig …
Mental Disorder Prevalence Among Populations Impacted by Coronavirus Pandemics: …
…
Exploring the Power and the Promise of In Silico Clinical Trials: Possibl …
The Practical Importance of a Standard Global Protocol for the Treatment of COVI …
Excerpts from ’Flaws in Medicine Must Be Corrected: An Open Reports to National …
Cluster 62 (112 Elements)
Twitter Users Display Desensitization to Bad Health News: An Observational Study …
Increased emotional eating during COVID-19 associated with lockdown, psychologic …
Impact of the COVID-19 Pandemic on Online Obsessive-Compulsive Disorder Support …
…
Partisan Pandemic: How Partisanship and Public Health Concerns Affect Individual …
The Effects of Online Group Mindfulness Training on Stress and Sleep Quality dur …
Psychotherapists Register Impacts of the COVID-19 Lockdown on Their Patients Obj …
Cluster 63 (111 Elements)
Evaluation of Chest CT scan as a screening and diagnostic tool in trauma patient …
The “Ground-Glass” Mimicker in The Pandemic: A Novel Radiomics-Based Machine Lea …
Clinical, laboratory and chest computed tomography aspects of hospitalized patie …
…
Prediction of Disease Progression of COVID-19 Based on Machine Learning: A Retro …
A Novel Triage Tool of Artificial Intelligence Assisted Diagnosis Aid System for …
CT Imaging Features of Different Clinical Types of COVID-19: A Chinese Multicent …
Cluster 64 (110 Elements)
Time use and social mixing during and around festive periods: Potential changes …
How to coordinate vaccination and social distancing to mitigate SARS-CoV-2 outbr …
Transmission of SARS-CoV-2 before and after symptom onset: impact of nonpharmace …
…
Immunity Passports and Moral Hazard The idea of using “immunity passports” to re …
A Social Network Model of COVID-19 I construct a dynamic social-network based mo …
Rapid Response Infrastructures for Pandemic Preparedness in Tertiary Care Hospit …
Cluster 65 (109 Elements)
The mechanism of SARS-CoV-2 nucleocapsid protein recognition by the human 14-3-3 …
The N501Y and K417N mutations in the spike protein of SARS-CoV-2 alter the inter …
Inferring Toll-Like Receptor induced epitope subunit vaccine candidate against S …
…
Virus-Receptor Interactions of Glycosylated Sars-Cov-2 Spike and Human Ace2 Rece …
Autotransmutable Sequence: Targeting Spike (S) Glycoprotein of SARS-COV-2 The go …
Modelling Approaches Towards Designing a Putative Autotransmutable Sequence Targ …
Cluster 66 (109 Elements)
COVID-19 – Protocol for Observational Studies Utilising Near Real-Time Electroni …
The German Corona Consensus Dataset (GECCO): A standardized dataset for COVID-19 …
Quality and Methodology of Clinical Practice Guidelines on Antiviral Pharmacothe …
…
How to Carry out Clinical Trials in Investigational Sites during COVID-19 Outbre …
Development and Validation of Tool to Appraise Guidelines on SARS-CoV-2 Infectio …
COVID-19: Time to Rethink the Randomized Controlled Trial and Consider More Effi …
Cluster 67 (109 Elements)
A Data-Free Digital Platform to Reach Families With Young Children During the CO …
Understanding Physicians’ Preferences for Telemedicine During the COVID-19 Pande …
Online Consultations in Mental Healthcare During the Covid-19 Outbreak: An Inter …
…
Telemedicine, Privacy, and Information Security in the Age of COVID-19 COVID-19 …
Bridging Learning in Medicine and Citizenship During the COVID-19 Pandemic: A Te …
How Telemedicine Integrated into China’s Anti-COVID-19 Strategies: Case from a N …
Cluster 68 (107 Elements)
Development and external validation of a logistic regression derived formula bas …
Severity-associated markers and assessment model for predicting the severity of …
Azithromycin in Hospitalised Patients with COVID-19 (RECOVERY): a randomised, co …
…
Risk Prediction for Poor Outcome and Death in Hospital In-Patients with COVID-19 …
UK-Wide Surveillance of Neurological and Neuropsychiatric Complications of COVID …
Development and Internal Validation of a Nomogram for Predicting 30-Day Mortalit …
Cluster 69 (107 Elements)
Fundamental Limitations of Contact Tracing for COVID-19 Abstract Contact tracing …
JUNE: open-source individual-based epidemiology simulation We introduce JUNE, an …
Does Contact Tracing Work? Quasi-Experimental Evidence from an Excel Error in En …
…
Rationing Social Contact During the COVID-19 Pandemic: Transmission Risk and Soc …
Is the Phone Mightier than the Virus? Cell Phone Access and Epidemic Containment …
Impact of Self-Imposed Prevention Measures and Short-Term Government Interventio …
Cluster 70 (107 Elements)
Staff to staff transmission as a driver of healthcare worker infections with COV …
SARS-CoV-2 Testing in Florida, Illinois, and Maryland: Access and Barriers OBJEC …
A Working Model to Inform Risk-Based Back to Work Strategies ABSTRACT …
…
Risk Factors for COVID-19: Community Exposure and Mask-Wearing Importance: Many …
Clozapine Treatment and Risk of COVID-19 Background: COVID-19 is a novel infecti …
Returning to Work: A COVID-19 Testing Need Indicator The need for COVID-19 testi …
Cluster 71 (107 Elements)
Paired SARS-CoV-2 Spike Protein Mutations Observed During Ongoing SARS-CoV-2 Vir …
Patterns of within-host genetic diversity in SARS-CoV-2 Monitoring the spread of …
Analysis of 46,046 SARS-CoV-2 whole-genomes leveraging principal component analy …
…
Larger viral genome size facilitates emergence of zoonotic diseases Emergence of …
Partial RdRp sequences offer a robust method for Coronavirus subgenus classifica …
Evolution of SARS-CoV-2 in Relation to the Host Immune System How can we explain …
Cluster 72 (106 Elements)
Mortalidade por COVID-19 em hospitais públicos e privados de Florianópolis/SC In …
Forecasting intensive care unit demand during the COVID-19 pandemic: A spatial a …
Clinical Trial Data Sharing for COVID-19–Related Research (Preprint) UNSTR …
…
The Effect of Social Distancing Measures on Intensive Care Occupancy: Evidence o …
Age As a Risk Factor of COVID-19 Mortality in the Philippines This paper aims to …
The Allocation of US$ 105 Billion in Global Funding for Infectious Disease Resea …
Cluster 73 (106 Elements)
Patterns of SARS-CoV-2 testing preferences in a national cohort in the United St …
Development and Evaluation of Two Rapid Indigenous IgG-ELISA immobilized with AC …
Comparison of Saliva with Healthcare Workers- and Patient-Collected Swabs in the …
…
Seroprevalence of SARS-CoV-2 in Palestine: A Cross-Sectional Seroepidemiological …
Risk Factors for Detection of SARS-CoV-2 in Healthcare Workers During April 2020 …
SARS-CoV-2 Antibody Prevalence in Health Care Workers of Lodi Hospital, the COVI …
Cluster 74 (106 Elements)
Remdesivir-ivermectin combination displays synergistic interaction with improved …
Elucidating the antiviral mechanism of different MARCH factors ABSTRACT The Memb …
Tea flavonoids blocking multiple SARS-CoV-2 protein targets judged from molecula …
…
In Silico Molecular Dynamics Docking of Drugs to the Inhibitory Active Site of S …
Paromomycin: A Potential Dual Targeted Drug Effectively Inhibits both Spike (S1) …
Ciprofloxacin and Moxifloxacin Could Interact with SARS-CoV-2 Protease: Prelimin …
Cluster 75 (104 Elements)
COVID-19 and the Generation of Novel Scientific Knowledge in a Dangerous Time. R …
Fast and scalable lipid nanoparticle formulation of niclosamide (nano NCM) effec …
Current evidence for COVID-19 therapies: a systematic literature review Abstract …
…
Computational Drug Discovery and Repurposing for the Treatment of COVID-19: A Sy …
Chloroquine’s Potential in Controlling SARS-CoV-2 and Other ACE2 Involved Virus …
Genomic Landscape Identifies Several Non-Synonymous Mutations in Novel Coronavir …
Cluster 76 (104 Elements)
Deep mining of early antibody response in COVID-19 patients yields potent neutra …
MHC-II constrains the natural neutralizing antibody response to the SARS-CoV-2 s …
Genetic epidemiology of variants associated with immune escape from global SARS- …
…
Is Karachi Knocking at Herd Immunity? A Possible Reason for Decline in SARS-CoV- …
The Human Leukocyte Antigen Class II Immunopeptidome of SARS-CoV-2 Spike Glycopr …
A Fc-Engineering Approach to Define Functional Humoral Correlates of Immunity Ag …
Cluster 77 (103 Elements)
Acceptable Performance of the Abbott ID NOW Among Symptomatic Individuals with C …
Association of Health Status and Smoking Behaviors with SARS-CoV-2 Positivity Ra …
Characterizing Long COVID in an International Cohort: 7 Months of Symptoms and T …
…
A Population-Based Seroepidemiological Study of SARS-CoV-2 in Spain (ENE-COVID) …
Remarkable Variability in SARS-CoV-2 Antibodies across Brazilian Regions: Report …
Temperature in Nursing Home Residents Systematically Tested for SARS-CoV-2 Backg …
Cluster 78 (103 Elements)
Covid-19 and Socioeconomic Crises in Africa: Overview of the Prevailing Incident …
Will the COVID-19 pandemic lead to a tsunami of suicides? A Swedish nationwide a …
On the frontline—Sustainability and development research amidst the COVID-19 pan …
…
Firm-level Exposure to Epidemic Diseases: COVID-19, SARS, and H1N1 Using tools d …
Forecasting the Economic Impact of Coronavirus on Developing Countries: Case of …
Pandemics Depress the Economy, Public Health Interventions Do Not: Evidence from …
Cluster 79 (103 Elements)
Direct RNA nanopore sequencing of SARS-CoV-2 extracted from critical material fr …
Development of a Recombinase-Aided Amplification Assay for Rapid Detection of Hu …
Detection of SARS-CoV2 antigen in human saliva may be a reliable tool for large …
…
Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation …
Rapid Design of a Bait Capture Platform for Culture- and Amplification-Free Next …
Evaluation of TaqMan Array Card (TAC) for the Detection of 28 Respiratory Pathog …
Cluster 80 (103 Elements)
COVID-19 plasma deep proteome reveals distinct signatures in severe patients …
Adaptive immunity to SARS-CoV-2 in cancer patients: The CAPTURE study SUMMARY T …
T cell activation, highly armed cytotoxic cells and a sharp shift in monocytes C …
…
Analysis of Peripheral Blood T Cell Receptor and B Cell Receptor Repertoires Rev …
The Abnormal ACE2 Expression Correlated with Immune Infiltration May Worsen Prog …
Transcriptomic Characteristics of Bronchoalveolar Lavage Fluid and Peripheral Bl …
Cluster 81 (101 Elements)
O monitoramento da Covid-19 através de Sistemas de Informação Geográfica: estrat …
A Comparative Analysis of the Outcome of Malaria Case Surveillance Strategies in …
A longitudinal study of the impact of human mobility on the incidence of COVID-1 …
…
Between Geography and Demography:Key Interdependencies and Exit Mechanisms for C …
Do Governments’ Decisions on Social Distancing Flatten out People’s Mobility dur …
The Monitoring of COVID-19 Infected Cases by Continent under the Application of …
Cluster 82 (101 Elements)
Face masks for preventing respiratory infections in the community: A systematic …
Face Masks, Public Policies and Slowing the Spread of COVID-19: Evidence from Ca …
Use of masks in public places in Poland during SARS-Cov-2 epidemic: a covert ob …
…
Resolving Tensions Between Disability Rights Law and COVID-19 Mask Policies As s …
The Psychology of Wearing Face Masks in Times of the COVID-19 Pandemic Backgroun …
Mask Is a Double-edged Sword in the Fight Against COVID-19 Pandemic The COVID-19 …
Cluster 83 (100 Elements)
Sea-spray aerosols and SARS-Cov-2: an analysis using AERONET data Even if the …
Modeling the Impact of COVID-19 on Air Quality in Southern California: Implicati …
COVID-19 control measure effects suggest excess winter mortality is more sensiti …
…
Enchanted Improvements in Air Quality across India - A Study from COVID-19 Lockd …
Influence of Air Pollution on Coronavirus (COVID-19): Some Evidences from Studie …
Do Latitude and Ozone Concentration Predict COVID-2019 Cases in 34 Countries? In …
Some findings:
- Cluster 9: Oil and stock market, economy and COVID-19
- Cluster 23: Working conditions of medical staff
- Cluster 31: Biological markers / laboratory values for predicting the course of COVID-19
- Cluster 45: Russian preprints
Dimensionality reduction with T-SNE
The t-SNE algorithm is a way to make complex data easier to understand by simplifying it and showing its most important features. It does this by taking data with many dimensions and turning it into a picture with fewer dimensions that we can see. This makes it easier to see patterns and relationships in the data. The t-SNE algorithm is often used to explore and visualize high-dimensional data.
T-SNE plots are pictures of complex data that can help us understand it better. However, they can be hard to read because they can get crowded, they don’t always show the big picture, and it’s not always clear what the points in the plot mean. So, we need to be careful when we interpret them.
This guide on distill.pub shows very nicely how to use T-SNE effectively.
Compute or load T-SNE embeddings
from sklearn.manifold import TSNE
if COMPUTE_TSNE:
X = torch.Tensor(embeddings)
X_embedded = TSNE(n_components=2, learning_rate='auto',init='random', perplexity=50, n_iter=1000).fit_transform(X)
np.save(OUTPUT_FILE_TSNE, X_embedded)
else:
X_embedded = np.load(OUTPUT_FILE_TSNE)Prepare dataframes
df_cats = pd.read_csv("../data/covid_preprints_dimensions_categories.csv")
df_hra = df_cats[df_cats.category_label == "category_hra"].drop_duplicates(subset=["id"])
df_x = df_cats[df_cats.category_label == "category_for"].drop_duplicates(subset=["id"])
df_subset = df
df_subset['tsne-2d-one'] = X_embedded[:,0]
df_subset['tsne-2d-two'] = X_embedded[:,1]
df_subset["has_resulting_publication"] = -pd.isna(df_subset.resulting_publication_doi)
df_subset = pd.merge(df_subset, df_hra, on="id")Plot T-SNE embeddings
plt.figure(figsize=(16,10))
sns.scatterplot(
x="tsne-2d-one", y="tsne-2d-two",
data=df_subset,
alpha=0.1,
palette=sns.color_palette("hls", len(df_subset["category_name"].unique())),
legend="full",
hue="category_name"
)<AxesSubplot:xlabel='tsne-2d-one', ylabel='tsne-2d-two'>